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synthetic lethality
Exploiting Cancer Synthetic Lethality in Cancer---Lessons Learnt from PARP Inhibitors
PARP inhibitors now have proven utility in the treatment of homologous recombination (HR) defective cancers. These drugs, and the …
Stephan J. Pettitt
,
Colm J. Ryan
,
Christopher J. Lord
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DOI
Book chapter
Targeting synthetic lethal paralogs in cancer
Synthetic lethal interactions, where mutation of one gene renders cells sensitive to inhibition of another gene, can be exploited for …
Colm J. Ryan
,
Ishan Mehta
,
Narod Kebabci
,
David J. Adams
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DOI
Paper
Comprehensive prediction of robust synthetic lethality between paralog pairs in cancer cell lines
Pairs of paralogs may share common functionality and, hence, display synthetic lethal interactions. As the majority of human genes have …
Barbara De Kegel
,
Niall Quinn
,
Nicola A Thompson
,
David J Adams
,
Colm J. Ryan
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Video
DOI
Paper
Predictions and Supplementary Data
Source Code
Cross-species identification of PIP5K1-, splicing-and ubiquitin-related pathways as potential targets for RB1-deficient cells
The
RB1
tumor suppressor is recurrently mutated in a variety of cancers including retinoblastomas, small cell lung cancers, …
Andrey A Parkhitko
,
Arashdeep Singh
,
Sharon Hsieh
,
Yanhui Hu
,
Richard Binari
,
Christopher J Lord
,
Sridhar Hannenhalli
,
Colm J. Ryan
,
Norbert Perrimon
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DOI
Paper
Integrative analysis of large-scale loss-of-function screens identifies robust cancer-associated genetic interactions
Genetic interactions, including synthetic lethal effects, can now be systematically identified in cancer cell lines using …
Christopher J Lord
,
Niall Quinn
,
Colm J. Ryan
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DOI
Paper
Cells lacking the RB1 tumor suppressor gene are hyperdependent on Aurora B kinase for survival
Small cell lung cancer (SCLC) accounts for 15% of lung cancers and is almost always linked to inactivating
RB1
and
TP53
mutations. SCLC …
Matthew G Oser
,
Raquel Fonseca
,
Abhishek A Chakraborty
,
Rachel Brough
,
Alexander Spektor
,
Rebecca B Jennings
,
Abdallah Flaifel
,
Jesse S Novak
,
Aditi Gulati
,
Elizabeth Buss
,
others
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DOI
Paper
Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
What makes a gene essential for cellular survival? In model organisms, such as budding yeast, systematic gene deletion studies have …
Barbara De Kegel
,
Colm J. Ryan
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DOI
Paper
Synthetic Lethality and Cancer – Penetrance as the Major Barrier
Synthetic lethality has long been proposed as an approach for targeting genetic defects in tumours. Despite a decade of screening …
Colm J. Ryan
,
Ilirjana Bajrami
,
Christopher J Lord
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DOI
Paper
E-cadherin/ROS1 inhibitor synthetic lethality in breast cancer
The cell adhesion glycoprotein E-cadherin (CDH1) is commonly inactivated in breast tumors. Precision medicine approaches that exploit …
Ilirjana Bajrami
,
Rebecca Marlow
,
Marieke van de Ven
,
Rachel Brough
,
Helen N Pemberton
,
Jessica Frankum
,
Feifei Song
,
Rumana Rafiq
,
Asha Konde
,
Dragomir B Krastev
,
others
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DOI
Paper
Identifying genetic dependencies in cancer by analyzing siRNA screens in tumor cell line panels
Loss-of-function screening using RNA interference or CRISPR approaches can be used to identify genes that specific tumor cell lines …
James Campbell
,
Colm J. Ryan
,
Christopher J Lord
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DOI
Paper
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